PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_023481-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 176aa    MW: 19805 Da    PI: 8.3094
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_023481-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.34.3e-061351655
                   HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   +++++  Lr+l+P+      +K++Ka+i+  Av Y+++Lq
  NNU_023481-RA  1 MKEKLYALRSLVPNI-----TKMDKASIVGDAVLYMQELQ 35
                   6788999*******7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.03134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-11155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.11E-6137No hitNo description
SuperFamilySSF474599.68E-10149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MKEKLYALRS LVPNITKMDK ASIVGDAVLY MQELQMQAKK LRAEIAGLES SFKGLERAEG  60
LVCSLNKTQI ADKKRQPVRK TIQQMDVFQV EERGFYVRVV CDKGEGVTVA LHRALESLTS  120
FDVQSSNCTT VSERLVLTFT INVRECEEKM NLATLELWVA GSLLNQGFEY KNPLAP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010243207.11e-127PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like isoform X1
SwissprotQ0V7X43e-64FIT_ARATH; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A061GWC52e-78A0A061GWC5_THECC; Basic helix-loop-helix protein BHLH20, putative
STRINGVIT_06s0061g00720.t018e-76(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.12e-65FER-like regulator of iron uptake